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3.01 - Exile

• Girls & boys by Good Charlotte
  plays when Clark steals from the ATM machines to buy his new car
  
• Hey mama by The Black Eyed Peas
  plays when Clark shows up at Atlantis with the woman that sold him the car
  
• Calling all angels by Train
  plays right after Clark flees the barn and while Lana and Chloe are discussing Clark's whereabouts
  
• Frantic by Metallica
  plays when Clark takes over the bank robbery from the Clown Robbers
  
• Goodtalk by Shocore
  plays when Clark brings Lana to Atlantis
  
• All the stars by Eastmountainsouth
  plays when Lana tells Chloe she will not give up on finding Clark

3.02 - Phoenix

• Maybe tomorrow by Stereophonics
  plays when Clark goes to The Torch news room to thank Chloe for standing by him through everything and not telling anyone where he was
  
• White flag by Dido
  plays at the very end of the episode
  

3.03 - Extinction

• Way away by Yellowcard
  plays at the very beginning of the episode when Jake (Gill-Boy) and Van are sitting outside the school entrance
  
• Give it to me by Vishiss
  plays when Clark, Pete and Chloe are walking through the hall, talking about what happened to Jake and weather or not he was affected by the meteor rocks
  
• I give you take by Maria
  plays when Clark goes to the Talon to ask Lana to point out who she saw sitting with Jake that day
  
• Goodbye again by Vertical Horizon
  plays near the end of the episode when Lana goes to the Kent Farm to see how Clark is doing
  

3.04 - Slumber

• Imitation of life by R.E.M.
  plays at the very beginning of the episode when Clark and Lana go for a swim
  
• Everybody hurts by R.E.M.
  plays when Clark and Lana are in the school hallway talking about their relationship
  
• Losing my religion by R.E.M.
  plays when Clark and Chloe are talking about the moment he and Lana had at the lake
  
• Bad day by R.E.M.
  plays when Clark is driving the Kent truck just after he stole the "medicine" from Sarah's house
  
• At my most beautiful by R.E.M.
  plays at the end of the episode when Clark is talking to Lana about the girl next door
  

3.05 - Perry

• I love this bar by Toby Keith
  plays at the beginning of the episode where Perry's getting drinks in Littleville
  
• Blue by LeAnn Rimes
  plays during the scene with Clark and Perry in the Wild Coyote
  
• Walkin' in Memphis by Lonestar
  plays at the very end of the episode, when Clark says goodbye to Perry at the bus stop
  

3.06 - Relic

• In your eyes by Aaron D
  
• I only have eyes for you by The Flamingoes
  
• Earth angel (will you be mine) by The Penguins
  
• Matchbox by Toby Keith
  

3.07 - Magnetic

• Amazing by Josh Kelley
  plays at the fair in a special guest appearance
  
• Hey now by Black Toast Music
  
• Trouble by Bonnie McKee
  
• Stupid girl by Cold
  plays when Lex is talking to Lana right before she drives away with Seth
  
• Over you by Michelle Featherstone
  
• Trouble by Pink
  plays when Lana and Seth are stuck in the melted road, and the cops come
  

3.08 - Shattered

• Hurt by Johnny Cash
  plays at the very end of the episode, as Lionel looks in on Lex, and Clark looks in on Lana
  

3.09 - Asylum

• Future proof by Massive Attack
  plays at the very beginning of the episode
  
• So far away by Staind
  plays at the end of the episode

3.10 - Whisper

• Cold and empty by Kid Rock
  plays at the very end of the episode as Lana is leaving
  

3.11 - Delete

• The reason by Hoobastank
  plays during Clark and Chloe's heart-to-heart at the Smallville Torch office
  
• Try by Nelly Furtado
  plays when Lana and Adam are talking in the Talon
  
• So damn lucky by Dave Matthews
  plays the second time Lana and Adam are talking in the Talon
  

3.12 - Hereafter

• 100 years by Five for Fighting
  plays in the beginning of the episode
  
• Two steps closer by Static
  
• I owe you by Stegala Music
  
• Rhapsody on a theme of Paganini
  played by Adam on the piano
  

3.13 - Velocity

• Fix up, look sharp by Dizzee Rascal
  
• The way I am by Knoc-Turn'Al
  
• You know by Saq
  
• Evolution by Shocore
  
• Rawkfist by ThousandFootKrutch
  
• Wonderwall by Ryan Adams
  plays at the very end of the episode
  

3.14 - Obsession

• Setting of the sun by Ben Jelen
  
• Echo by Blake Hight
  
• Parking by The Fuzz
  
• One thing by Finger Eleven
  

3.15 - Resurrection

• Everything by Alanis Morrissette
  plays at the very end of the episode, when Lana and Clark are in the Talon
  
• Infatuation by The Rapture
  plays when Lana and Lex are talking in the Talon
  

3.16 - Crisis
No music in this episode

3.17 - Legacy

• One in a blue moon by Edie Brickell
  
• Mona Lisa by Grant-Lee Phillips
  
• Love's divine by Seal
  

3.18 - Truth

• Someday by Fastball
  
• Better don't do by Ing
  
• Stabat mater by Paul Schwartz
  
• Selling out by The Fuzz
  

3.19 - Memoria

• My immortal by Evanescence
  plays at the end of the episode when Martha and Clark are talking in the loft
  

3.20 - Talisman

• Chase me by Katie Herzig
  
• Reason why by Rachael Yamagata
  
• From afar by Red Letter Day
  

3.21 - Forsaken

• When the sun goes down by Charlie Mars
  
• What you're thinking by Christopher Jak

3.22 - Covenant

• One moment more by Mindy Smith